On 04/26/2017 10:00 AM, James W. MacDonald wrote:
I see the binaries on the respective web pages, but biocLite seems not to:
I'm not 100% sure but can you try again in a new R session? I think you
have a cached version of the repository index.
Martin
biocLite()
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.5 (BiocInstaller 1.26.0), R 3.4.0 (2017-04-21).
installation path not writeable, unable to update packages: foreign
Old packages: 'AnnotationDbi', 'Biobase', 'BiocGenerics', 'biomaRt',
'IRanges',
'S4Vectors'
Update all/some/none? [a/s/n]: a
There are binary versions available but the source versions are later:
binary source needs_compilation
AnnotationDbi 1.37.4 1.38.0 FALSE
Biobase 2.35.1 2.36.0 TRUE
BiocGenerics 0.21.3 0.22.0 FALSE
biomaRt 2.31.10 2.32.0 FALSE
IRanges 2.9.19 2.10.0 TRUE
S4Vectors 0.13.17 0.14.0 TRUE
Do you want to install from sources the packages which need compilation?
y/n:
sessionInfo()
R version 3.4.0 (2017-04-21)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 14393)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.26.0
loaded via a namespace (and not attached):
[1] compiler_3.4.0 tools_3.4.0
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