The update won't get built if there is an error during check: Quitting from lines 42-54 (timescape_vignette.Rmd) Error: processing vignette 'timescape_vignette.Rmd' failed with diagnostics: Perturbations data frame must have the following column names: "pert_name", "prev_tp", "frac" Execution halted
You can either check the build page (which you should be doing, since packages that fail check won't be part of the release on MONDAY): http://bioconductor.org/checkResults/devel/bioc-LATEST/ or (better yet), you should build and check locally before you check in your changes. On Fri, Apr 21, 2017 at 4:41 PM, Maia Smith <ma...@sfu.ca> wrote: > I believe I did (see diff in DESCRIPTION file in the commit - > https://github.com/Bioconductor-mirror/timescape/commit/ > 13597696049eda5858b755ca2777486f5b88f588 > ). > > Maia > > > > On Fri, Apr 21, 2017 at 10:53 AM, Sean Davis <seand...@gmail.com> wrote: > > > Be sure that you bumped the version number to trigger a build. > > > > Sean > > > > > > On Fri, Apr 21, 2017 at 1:18 PM, Maia Smith <ma...@sfu.ca> wrote: > > > >> Hi Sean, > >> > >> Thanks for your response, perhaps I was unclear. I used "Scenario 1: Use > >> Git Locally, No GitHub Repository" in the how-to page, and committed to > svn > >> (I think!). The changes are reflected in the bioconductor mirror ( > >> https://github.com/Bioconductor-mirror/timescape) but not in the > >> vignette (https://bioconductor.org/packages/devel/bioc/vignettes/time > >> scape/inst/doc/timescape_vignette.html). Perhaps I made an error > >> somewhere? > >> > >> Best, > >> Maia > >> > >> On Thu, Apr 20, 2017 at 1:24 PM, Sean Davis <seand...@gmail.com> wrote: > >> > >>> Hi, Maia. > >>> > >>> The git mirror is not used for building packages. Instead, you will > >>> need to commit to svn for changes to show up on Bioconductor. See > here for > >>> details of working with git and svn together. > >>> > >>> https://www.bioconductor.org/developers/how-to/git-mirrors/ > >>> > >>> If I misunderstood what you are saying, could you clarify a bit? > >>> > >>> Sean > >>> > >>> > >>> On Thu, Apr 20, 2017 at 3:35 PM Maia Smith <ma...@sfu.ca> wrote: > >>> > >>>> How long does it take for the html vignette to update after a change > in > >>>> the > >>>> git mirror has taken place? I changed my code in the git mirror a few > >>>> days > >>>> ago, and the html vignette hasn't incorporated these changes yet. > >>>> > >>>> Thanks in advance for your help. > >>>> > >>>> Maia > >>>> > >>>> [[alternative HTML version deleted]] > >>>> > >>>> _______________________________________________ > >>>> Bioc-devel@r-project.org mailing list > >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel > >>>> > >>> > >> > > > > > > -- > > Sean Davis, MD, PhD > > Center for Cancer Research > > National Cancer Institute > > National Institutes of Health > > Bethesda, MD 20892 > > https://seandavi.github.io/ > > https://twitter.com/seandavis12 > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
