Yes, it is. Aimin
On Wed, Apr 5, 2017 at 7:20 AM, Shepherd, Lori < lori.sheph...@roswellpark.org> wrote: > Are these permanent system files or files that are created during > examples/vignettes? > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Cancer Institute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Aimin Yan <aimin.at.w...@gmail.com> > *Sent:* Tuesday, April 4, 2017 3:41:02 PM > *To:* Shepherd, Lori > *Cc:* bioc-devel@r-project.org > *Subject:* Re: [Bioc-devel] Check error on malbec2 > > Thank you, I changed to use tempdir(), and it works now. > One more question is how to locate those outputs in temporary directory since > I want users to use those outputs. > > Aimin > > On Tue, Apr 4, 2017 at 2:00 PM, Shepherd, Lori < > lori.sheph...@roswellpark.org> wrote: > >> Write and access your output to a temporary directory instead using >> tempdir(). >> >> >> >> Lori Shepherd >> >> Bioconductor Core Team >> >> Roswell Park Cancer Institute >> >> Department of Biostatistics & Bioinformatics >> >> Elm & Carlton Streets >> >> Buffalo, New York 14263 >> ------------------------------ >> *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Aimin >> Yan <aimin.at.w...@gmail.com> >> *Sent:* Tuesday, April 4, 2017 1:45:28 PM >> *To:* bioc-devel@r-project.org >> *Subject:* [Bioc-devel] Check error on malbec2 >> >> In the package I am trying ti submit to bioconductor, I got the following >> error for check. >> >> Warning in dir.create(output.file.dir) : >> cannot create dir '/home/pkgbuild/OutputEnmap', reason 'Permission >> denied' >> Warning in file(file, ifelse(append, "a", "w")) : >> cannot open file '/home/pkgbuild/OutputEnmap/enrichmap_GO.xls': No such >> file or directory >> Error in file(file, ifelse(append, "a", "w")) : >> cannot open the connection >> Calls: enrichmentmap -> write.table -> file >> >> It seems I do not have permission to create a directory. >> Does anyone know how to fix this check error? >> >> >> Thanks, >> Aimin >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> This email message may contain legally privileged and/or confidential >> information. If you are not the intended recipient(s), or the employee or >> agent responsible for the delivery of this message to the intended >> recipient(s), you are hereby notified that any disclosure, copying, >> distribution, or use of this email message is prohibited. If you have >> received this message in error, please notify the sender immediately by >> e-mail and delete this email message from your computer. Thank you. > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
