On 03/29/2017 12:57 AM, Dan Tenenbaum wrote:
Don't install R-3.5; install R-3.4 from
https://cran.rstudio.com/bin/windows/base/rtest.html
Expanding a little --
R has a yearly release cycle, Bioc a 6 month release cycle
Bioc-devel tries to use the R that will be used when Bioc-devel becomes
the next Bioc release.
bioc-devel becomes Bioc-3.4 later in April. R-3.4 is the version of R
that will be in use then.
R-3.4 is only recently available, following the R release schedule
https://developer.r-project.org/; it is a branch of R-devel, created
yesterday.
Bioc-devel will CONTINUE TO USE the R-3.4 branch, because R-3.4 will be
the version of R in use when Bioc-3.5 is released in the fall.
For the next six months Bioc knows nothing about R-devel.
Martin
Dan
----- Original Message -----
From: "bioc-devel" <bioc-devel@r-project.org>
To: "bioc-devel" <bioc-devel@r-project.org>
Sent: Tuesday, March 28, 2017 7:59:57 PM
Subject: [Bioc-devel] Problem to install bioconductor for R devel (3.5)
Hi,
I have install development version of r from
https://cran.r-project.org/bin/windows/base/rdevel.html
But when i have tried to install Bioconductor, i got following error.
Can any one please explain why ?
It said "Bioconductor does not yet support R version 3.5.0" ....but why ??
##################################################################
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R
")
Bioconductor version 3.5 (BiocInstaller 1.25.3), ?biocLite for help
Bioconductor does not yet support R version 3.5.0
biocLite()
BioC_mirror:
https://bioconductor.org
Using Bioconductor 3.5 (BiocInstaller 1.25.3), R Under development (unstable)
(2017-03-27 r72423).
Installing package(s) ‘Biobase’, ‘IRanges’, ‘AnnotationDbi’
also installing the dependency ‘S4Vectors’
Warning: unable to access index for repository
https://bioconductor.org/packages/3.5/bioc/bin/windows/contrib/3.5:
cannot open URL
'https://bioconductor.org/packages/3.5/bioc/bin/windows/contrib/3.5/PACKAGES
'
Warning: unable to access index for repository
https://bioconductor.org/packages/3.5/data/annotation/bin/windows/contrib/3.5:
cannot open URL
'https://bioconductor.org/packages/3.5/data/annotation/bin/windows/contrib/3.5/PACKAGES
'
Warning: unable to access index for repository
https://bioconductor.org/packages/3.5/data/experiment/bin/windows/contrib/3.5:
cannot open URL
'https://bioconductor.org/packages/3.5/data/experiment/bin/windows/contrib/3.5/PACKAGES
'
Warning: unable to access index for repository
https://bioconductor.org/packages/3.5/extra/bin/windows/contrib/3.5:
cannot open URL
'https://bioconductor.org/packages/3.5/extra/bin/windows/contrib/3.5/PACKAGES
'
Error in readRDS(dest) : unknown input format
Tanvir Ahamed
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