Hello all, I'm using travis for checking my project build and found something that looks like a bug in how biocLite installs package dependencies. It appears that at some point biocLite started to install them in an alphabet order, not topological, and specifically on OS X.
I've made a small dummy package to illustrate this: see https://github.com/assaron/travis-test and corresponding travis build https://travis-ci.org/assaron/travis-test. There reactome.db package should be installed but fails on osx platform in bioc-devel version. What happens there is reactome.db is installed before RSQLite, while reactome.db dependes on RSQLite via AnnotationDbi ( https://travis-ci.org/assaron/travis-test/jobs/214404313#L630). Compare it with bioc-release version: https://travis-ci.org/assaron/travis-test/jobs/214404316#L543 or bioc-devel but on linux: https://travis-ci.org/assaron/travis-test/jobs/214389446#L928 Can anyone reproduce this behavior at their OS X machine? Is this bug in biocLite or Travis? Best, Alexey [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
