Thanks Ryan. I've determined the issue - a rather embarrassing one, actually, where the C array wasn't of the right length - I'm not quite sure why it didn't show up earlier. Anyway, patches have been committed to release and devel.
Cheers, Aaron On 22/03/17 01:14, Ryan Thompson wrote: > Hi Aaron, > > I'm making a ChIP-Seq analyisis pipeline using csaw, and I'm running > into an inconsistent error/segfault. I've reduced it to a test case > which you can find > here: > https://www.dropbox.com/sh/2a2vpb5ek4413fx/AAAXwCaTzsAmfyPefwAbFg8Na?dl=0 > > The test case consists of my R workspace saved with save.image right > before the code that causes the segfault along with a script that loads > the workspace and then runs the offending code. The code consists of > running combineOverlaps on each of a list of topTags tables. Seemingly > at random, some but not all of the calls to combineOverlaps will fail > and error, and occasionally R will segfault. Since the bug is random, > I've also included a transcript of me running the script until it > crashes, as well as a text file with the traceback in it. > > Can you help me debug the issue here? > > Thanks, > > -Ryan _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
