after example(RangedSummarizedExperiment)
> rse1
class: RangedSummarizedExperiment
dim: 200 6
metadata(0):
assays(1): counts
rownames: NULL
rowData names(1): feature_id
colnames(6): A B ... E F
colData names(1): Treatment
> sort(rse1)
Error in get(name, envir = asNamespace(pkg), inherits = FALSE) :
object '.order_GenomicRanges' not found
Enter a frame number, or 0 to exit
1: sort(rse1)
2: sort(rse1)
3: .local(x, decreasing, ...)
4: GenomicRanges:::.order_GenomicRanges
5: get(name, envir = asNamespace(pkg), inherits = FALSE)
> sessionInfo()
R Under development (unstable) (2017-02-08 r72142)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS release 6.8 (Final)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] SummarizedExperiment_1.5.6 DelayedArray_0.1.7
[3] matrixStats_0.51.0 Biobase_2.35.0
[5] GenomicRanges_1.27.22 GenomeInfoDb_1.11.9
[7] IRanges_2.9.18 S4Vectors_0.13.15
[9] BiocGenerics_0.21.3 BiocInstaller_1.25.3
loaded via a namespace (and not attached):
[1] lattice_0.20-34 bitops_1.0-6 grid_3.4.0
[4] zlibbioc_1.21.0 XVector_0.15.2 Matrix_1.2-8
[7] tools_3.4.0 RCurl_1.95-4.8 compiler_3.4.0
[10] GenomeInfoDbData_0.99.0
Selection: 0
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