On 01/06/2017 06:00 AM, Dario Strbenac wrote:
Good day,
The destination parameter is mandatory and has no default.
asBam(samFile)
Error in is(path, "RsamtoolsFile") :
argument "destination" is missing, with no default
Would a good default be the same path as as the input file, but having the suffix "bam"
instead of "sam"?
thanks for the suggestion, this (and likewise for asSam()) is
implemented in 1.27.11.
Martin
--------------------------------------
Dario Strbenac
University of Sydney
Camperdown NSW 2050
Australia
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