Well that's embarrassing, thanks Val!
On Tue, Dec 27, 2016 at 11:00 PM, Obenchain, Valerie <
valerie.obench...@roswellpark.org> wrote:
> I think you're missing a 'u',
>
> > biocLite("hgu133plus2.db")
> BioC_mirror: https://bioconductor.org
> Using Bioconductor 3.5 (BiocInstaller 1.25.2), R Under development
> (unstable)
> (2016-10-22 r71581).
> Installing package(s) ‘hgu133plus2.db’
> trying URL
> 'https://bioconductor.org/packages/3.5/data/annotation/
> src/contrib/hgu133plus2.db_3.2.3.tar.gz'
> Content type 'application/x-gzip' length 2139642 bytes (2.0 MB)
> ==================================================
> downloaded 2.0 MB
>
> Val
>
> On 12/27/2016 02:00 PM, Levi Waldron wrote:
> > I don't seem to be able to install hgu133plus2.db in bioc-devel?
> >
> >> library(BiocInstaller)
> > Bioconductor version 3.5 (BiocInstaller 1.25.2), ?biocLite for help
> >
> >> biocLite("hg133plus2.db")
> > BioC_mirror: https://bioconductor.org
> >
> > Using Bioconductor 3.5 (BiocInstaller 1.25.2), R Under development
> (unstable)
> >
> > (2016-10-26 r71594).
> >
> > Installing package(s) ‘hg133plus2.db’
> >
> > Warning: unable to access index for repository
> > https://cran.rstudio.com/bin/macosx/mavericks/contrib/3.4:
> >
> > cannot download all files
> >
> > Warning message:
> >
> > package ‘hg133plus2.db’ is not available (for R Under development)
> >
> >> sessionInfo()
> > R Under development (unstable) (2016-10-26 r71594)
> >
> > Platform: x86_64-apple-darwin13.4.0 (64-bit)
> >
> > Running under: OS X Yosemite 10.10.5
> >
> >
> > locale:
> >
> > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> >
> >
> > attached base packages:
> >
> > [1] stats graphics grDevices utils datasets methods base
> >
> >
> > other attached packages:
> >
> > [1] BiocInstaller_1.25.2
> >
> >
> > loaded via a namespace (and not attached):
> >
> > [1] tools_3.4.0
> >
> >
>
>
>
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--
Levi Waldron
http://www.waldronlab.org
Assistant Professor of Biostatistics CUNY School of Public Health
US: +1 646-364-9616 Skype:
levi.waldron
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