I am trying to build a pkgdown documentation for Bioconductor package.
I have wrote about it on the stackoverflow
http://stackoverflow.com/questions/36874972/pkgdown-r-package-build-site-function-causes-dependent-packages-unable-to-be-loa
but the question didn't receivew the expected attention.

I have started a bounty, looking to give 50 points of my reputation for the
best answer.

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