On 11/16/2016 02:44 AM, Ted Wong wrote:
Hi,
I need help to reproduce a crash in my crash report.
The crash report is:
http://master.bioconductor.org/checkResults/3.4/bioc-LATEST/Anaquin/malbec1-buildsrc.html
This is what I did:
1. svn co --username ... --password ....
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Anaquin
to create a new directory
2. svn update -r 123975
because this is the reversion stated in the crash report
3. cd ../ and R CMD build --keep-empty-dirs --no-resave-data Anaquin
to run the tests.
That's what I got:
* checking for file ‘Anaquin/DESCRIPTION’ ... OK
* preparing ‘Anaquin’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘Anaquin_1.1.2.tar.gz’
I tried the command on:
* Ubuntu, Bioconductor 3.3, R 3.3.1
* Mac OS-X, Bioconductor 3.4, R 3.3.2
The builds are of the current Bioconductor, so version 3.4. Check that
this is the case, and that your packages are current
BiocInstaller::biocVersion()
BiocInstaller::biocValid()
FWIW, I did
cd Anaquin
R CMD INSTALL .
cd vignettes
R CMD Stangle Anaquin.Rmd
R
> source("Anaquin.R", echo=TRUE, max=Inf)
and then got
> plotLinear(anaquin, title=title, xlab=xlab, ylab=ylab)
Error in unit(aspect_ratio, "null") :
'x' and 'units' must have length > 0
> traceback()
17: stop("'x' and 'units' must have length > 0")
16: unit(aspect_ratio, "null")
15: unit.c(grobHeight(axis_h$top), unit(aspect_ratio, "null"),
grobHeight(axis_h$bottom))
14: f(...)
13: self$draw_panels(panels, layout, x_scales, y_scales, ranges,
coord, data, theme, self$params)
12: f(..., self = self)
11: self$facet$render_panels(panels, self$panel_layout,
self$panel_scales$x,
self$panel_scales$y, self$panel_ranges, coord, data, theme,
labels)
10: f(..., self = self)
9: layout$render(geom_grobs, data, plot$coordinates, theme, plot$labels)
8: ggplot_gtable(data)
7: print.ggplot(p)
6: print(p)
5: plotLinear(anaquin, title = title, xlab = xlab, ylab = ylab) at
Anaquin.R#26
4: eval(expr, envir, enclos)
3: eval(ei, envir)
2: withVisible(eval(ei, envir))
1: source("Anaquin.R", echo = TRUE, max = Inf)
> BiocInstaller::biocVersion()
[1] '3.4'
> BiocInstaller::biocValid()
[1] TRUE
Martin
Both worked.
Ted,
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