Hi James,
On 11/14/2016 06:38 PM, James Collins wrote:
I have attempted to remove several .tar.gz files from the LOBSTAHS package
directory using a series of cherry-picked commits. (I had successfully
removed these .tar files a few months ago, but somehow they just reappeared
in the directory after I invoked git svn rebase during a recent attempt to
commit some other changes.) I was able to successfully remove them a second
time from the svn directory, but they are still showing up on the
Bioconductor GIt mirror. I even tried re-committing the files, and then
making a new commit that deleted them, but this did not work as far as the
Git mirror is concerned (it was successful on svn). Please advise, any help
appreciated.
I'm not sure I understand what you are trying to achieve with these
commits e.g. the last 3 svn commits for LOBSTAHS are:
hpages@latitude:~$ svn log -v
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/LOBSTAHS -r
124003:HEAD --username readonly --password readonly
------------------------------------------------------------------------
r124003 | j.collins | 2016-11-14 17:58:22 -0800 (Mon, 14 Nov 2016) | 1 line
Changed paths:
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.1.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.2.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.3.1.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.3.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.0.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.1.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.2.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.3.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.4.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.5.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.6.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.7.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.8.tar.gz
Remove .tar.gz files
------------------------------------------------------------------------
r124004 | j.collins | 2016-11-14 18:05:14 -0800 (Mon, 14 Nov 2016) | 1 line
Changed paths:
A /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.1.tar.gz
A /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.2.tar.gz
A /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.3.1.tar.gz
A /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.3.tar.gz
A /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.0.tar.gz
A /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.1.tar.gz
A /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.2.tar.gz
A /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.3.tar.gz
A /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.4.tar.gz
A /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.5.tar.gz
A /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.6.tar.gz
A /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.7.tar.gz
A /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.8.tar.gz
Commit .tar.gz files
------------------------------------------------------------------------
r124005 | j.collins | 2016-11-14 18:08:32 -0800 (Mon, 14 Nov 2016) | 1 line
Changed paths:
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.1.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.2.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.3.1.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.3.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.0.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.1.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.2.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.3.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.4.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.5.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.6.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.7.tar.gz
D /trunk/madman/Rpacks/LOBSTAHS/LOBSTAHS_0.99.8.tar.gz
Remove .tar.gz files
------------------------------------------------------------------------
Why would you delete files, then add them, and then delete them again?
It's true though that the deleted files still show up on the
Bioconductor-mirror:
https://github.com/Bioconductor-mirror/LOBSTAHS
which indicates that there might be a problem with our mirroring
script. Your last svn commit was less than 2 hours ago so maybe
it's just because of the lag between the moment you commit to svn
and the moment the commit shows up on Bioconductor-mirror.
So let's wait and see.
The truth is that the .tar.gz files are not in the svn repo anymore,
which I guess is what really matters for now:
hpages@latitude:~$ svn ls
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/LOBSTAHS
--username readonly --password readonly
.BBSoptions
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LOBSTAHS.Rproj
NAMESPACE
R/
README.md
data/
inst/
man/
vignettes/
so no need to fight so hard against these zombie .tar.gz files ;-)
Cheers,
H.
Jamie Collins
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