Hi BiocDevel: I got an error when tried to install several packages from Bioconductor (rtracklayer, SummarizedExperiments), so I removed BiocInstaller and reinstall again now error is gone. But, I got warning which previously happened when I failed to install rtracklayer packages. Because this warning sometime prevent to install package from Bioconductor. Can anyone help me what's going on? Thanks a lot
> BiocInstaller::biocValid() Warning: unable to access index for repository https://bioconductor.org/packages/3.5/data/annotation/src/contrib: cannot open URL ' https://bioconductor.org/packages/3.5/data/annotation/src/contrib/PACKAGES' Here is session info : > sessionInfo() R Under development (unstable) (2016-11-13 r71655) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200) locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] parallel stats4 stats graphics grDevices utils datasets [8] methods base other attached packages: [1] SummarizedExperiment_1.5.3 Biobase_2.35.0 [3] rtracklayer_1.35.1 GenomicRanges_1.27.6 [5] GenomeInfoDb_1.11.4 IRanges_2.9.8 [7] S4Vectors_0.13.2 BiocGenerics_0.21.0 [9] BiocInstaller_1.25.2 loaded via a namespace (and not attached): [1] lattice_0.20-34 XML_3.98-1.5 [3] Rsamtools_1.27.2 Biostrings_2.43.0 [5] GenomicAlignments_1.11.1 bitops_1.0-6 [7] grid_3.4.0 zlibbioc_1.21.0 [9] XVector_0.15.0 Matrix_1.2-7.1 [11] BiocParallel_1.9.1 tools_3.4.0 [13] RCurl_1.95-4.8 compiler_3.4.0 > -- Jurat Shahidin Dipartimento di Elettronica, Informazione e Bioingegneria Politecnico di Milano Piazza Leonardo da Vinci 32 - 20133 Milano, Italy Mobile : +39 3279366608 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
