I'll keep this in mind. Thanks for reminding. Could you please elaborate your answer on my doubt ? Thanks
On Fri, Nov 11, 2016 at 5:27 PM, Martin Morgan < martin.mor...@roswellpark.org> wrote: > Please respond on the mailing list, so that others in similar situations > can benefit / contribute. > > On 11/11/2016 10:39 AM, Jurat Shayidin wrote: > >> Dear Martin : >> >> Thanks for your prompt hit . I used to have R release version, so after >> I installed devel version of R, I removed R released version, while only >> keep devel version instead. Is this correct ? I didn't clean R session, >> how can I make it happen on windows? Plus, How to make R session >> vanilla ? What's right configuration both R devel and Bioc devel before >> building my packages ? Could you elaborate your answer please? Thank you >> very much >> >> Best regards : >> >> On Fri, Nov 11, 2016 at 4:04 PM, Martin Morgan >> <martin.mor...@roswellpark.org <mailto:martin.mor...@roswellpark.org>> >> >> wrote: >> >> On 11/11/2016 09:44 AM, Jurat Shayidin wrote: >> >> Dear BiocDevel: >> >> I ran into the issue after installed devel version of R and Bioc >> 3.4. >> Because my packages depends on some packages from CRAN >> repository, now I >> failed to installed paclages from CRAN. I don't have problem >> when I used >> released version of R. Because new packages must coordinate with >> devel >> version of Bioc and R, so I did it. But can't installl packages >> from CRAN >> like dplyr. How can I overcome this issue ? Any quick solution >> ? I got >> error as follow: >> >> >> BiocInstaller::useDevel() >> >> Error: 'devel' version already in use >> >> install.packages("dplyr") >> >> Error in install.packages : missing value where TRUE/FALSE needed >> >> >> this does not happen for me; you'll need to debug on your end, >> minimally, reporting the output of traceback() after the error occurs. >> >> are you in a clean R session with no .RData or other objects loaded >> that might interfere with R? >> >> R --vanilla >> >> Martin >> >> PS -- please do not 'close' questions that have been answered on >> support.bioconductor.org <http://support.bioconductor.org>. >> >> >> >> >> >> sessionInfo() >> >> R Under development (unstable) (2016-11-09 r71642) >> Platform: x86_64-w64-mingw32/x64 (64-bit) >> Running under: Windows >= 8 x64 (build 9200) >> >> locale: >> [1] LC_COLLATE=English_United States.1252 >> [2] LC_CTYPE=English_United States.1252 >> [3] LC_MONETARY=English_United States.1252 >> [4] LC_NUMERIC=C >> [5] LC_TIME=English_United States.1252 >> >> attached base packages: >> [1] parallel stats4 stats graphics grDevices >> [6] utils datasets methods base >> >> other attached packages: >> [1] SummarizedExperiment_1.5.2 Biobase_2.35.0 >> [3] XVector_0.15.0 rtracklayer_1.35.1 >> [5] GenomicRanges_1.27.5 GenomeInfoDb_1.11.3 >> [7] IRanges_2.9.7 S4Vectors_0.13.2 >> [9] BiocGenerics_0.21.0 BiocInstaller_1.25.2 >> >> loaded via a namespace (and not attached): >> [1] lattice_0.20-34 XML_3.98-1.5 >> [3] Rsamtools_1.27.2 Biostrings_2.43.0 >> [5] GenomicAlignments_1.11.0 bitops_1.0-6 >> [7] grid_3.4.0 zlibbioc_1.21.0 >> [9] Matrix_1.2-7.1 BiocParallel_1.9.1 >> [11] tools_3.4.0 RCurl_1.95-4.8 >> [13] compiler_3.4.0 >> >> >> >> >> >> >> >> This email message may contain legally privileged and/or >> confidential information. If you are not the intended recipient(s), >> or the employee or agent responsible for the delivery of this >> message to the intended recipient(s), you are hereby notified that >> any disclosure, copying, distribution, or use of this email message >> is prohibited. If you have received this message in error, please >> notify the sender immediately by e-mail and delete this email >> message from your computer. Thank you. >> >> >> >> >> -- >> Jurat Shahidin >> >> Dipartimento di Elettronica, Informazione e Bioingegneria >> Politecnico di Milano >> Piazza Leonardo da Vinci 32 - 20133 Milano, Italy >> Mobile : +39 3279366608 >> > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > -- Jurat Shahidin Dipartimento di Elettronica, Informazione e Bioingegneria Politecnico di Milano Piazza Leonardo da Vinci 32 - 20133 Milano, Italy Mobile : +39 3279366608 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
