On 11/09/2016 05:25 PM, James W. MacDonald wrote:
On Wed, Nov 9, 2016 at 4:48 PM, Martin Morgan <martin.mor...@roswellpark.org <mailto:martin.mor...@roswellpark.org>> wrote: I updated the code to remove the R CMD check error (svn revision r123826) and to clean up miscellaneous NOTEs about formatting (r123827). I ported these changes to release. It is likely that the package has a number of other similar problems (assigning exprs() with incompatible dimnames) so a thorough review is required. There are vignette products in the vignettes/ directory, but no Rnw / Rmd files; this needs to be corrected. If there is no-one willing to actively maintain this package, I think that it should be deprecated in devel. This would impact a number of packages that Depend, Import, or Suggest lumi. Pan Du has several packages. Is this an issue for all of those packages or just lumi?
I think that's a reasonable conclusion. Martin
Jim Martin On 10/28/2016 06:47 AM, Gang Feng wrote: Hi, We are working on one issue in the lumi package. Sorry about this. Gilbert On 10/28/16 3:20 AM, "Bioc-devel on behalf of 王棣台" <bioc-devel-boun...@r-project.org <mailto:bioc-devel-boun...@r-project.org> on behalf of r04945...@ntu.edu.tw <mailto:r04945...@ntu.edu.tw>> wrote: Hi, all I am the author of package "anamiR". I got a Warning message "Warning: dependency ''lumi" is not available" when I installed anamiR. Also, I tried other packages which depend on "lumi" package, and all got the same warning message. Is there any way I can solve this problem? Best regards, T.Wang [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org> mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_ <https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_> listinfo_bioc-2Ddevel&d=CwICAg&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6 ws&r=k93hb-mTY3FnvPobw-XK7YsatsLioMulL2zwAXZNoRo&m=LgNbgBxYv1xoQVTZ41uDrgo XiSE2MpwIrBuyrgPBGQQ&s=_cCwN-6SMimKn17T4EAM9tLSK8ouLKv-GtD9MKPf9_U&e= _______________________________________________ Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel <https://stat.ethz.ch/mailman/listinfo/bioc-devel> This email message may contain legally privileged and/or...{{dropped:2}} _______________________________________________ Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel <https://stat.ethz.ch/mailman/listinfo/bioc-devel> -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099
This email message may contain legally privileged and/or...{{dropped:2}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel