Thanks very much. I will do that. Best wishes,
Andrea ________________________________ From: Martin Morgan <martin.mor...@roswellpark.org> Sent: 24 October 2016 13:58:28 To: Rodriguez Martinez, Andrea; bioc-devel@r-project.org Subject: Re: [Bioc-devel] SummarizedExperiment On 10/24/2016 07:48 AM, Rodriguez Martinez, Andrea wrote: > Hi, > > > I am developing a package based on the SummarizedExperiment package. I have > included the SummarizedExperiment package in both DESCRIPTION and NAMESPACE > files. In some functions of my package, and also in the vignette, I use the > function "assays()" from the SummarizedExperiment package. However, when I > try to build the vignette, it says: function "assays()" not found. The same > happens when checking my package. > > Imports: SummarizedExperiment and importFrom(SummarizedExperiment, assays) or import(SummarizedExperiment) is sufficient for R functions defined in your package. The code in a vignette is run as if it were a script source'd in to R, so if you use assays() at the 'top level' (seen by the user) then you need to ensure that assays() is visible -- include SummarizedExperiment in the Depends: field of your package and library(yourpackage) in the vignette, or library(SummarizedExperiment) in your vignette, or SummarizedExperiment::assays() in your vignette, etc. If that doesn't help, feel free to point to the specific vignette in github. Martin > Any idea for this ? > > > Thanks, > > > Andrea > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
