On 09/21/2016 12:01 AM, Rainer Johannes wrote:
Dear all,
I recently observed that the svn and the github mirror of `ensembldb` is out of
sync. Is this something specific to `ensembldb` or is this a general problem?
Is there anything I could do to fix this?
I think it is up-to-date now? I think the problem is when several svn
commits occur in quick succession, and the second tries to sync the git
repository while the first is still working. I guess the common case is
when you're working on a git repo and merge it to svn in a way that
retains the discrete git commits as svn commits.
Each commit triggers this script
https://github.com/Bioconductor/mirror/blob/master/update_git.py
and these lines (usually the second?) fail
https://github.com/Bioconductor/mirror/blob/master/update_git.py#L87
https://github.com/Bioconductor/mirror/blob/master/update_git.py#L90
https://github.com/Bioconductor/mirror/blob/master/update_git.py#L93
leaving the local git repository in a condition that requires manual
clean-up.
I guess this requires a more sophisticated implementation, where the svn
commit adds a task to a time-ordered queue, and the queue waits until
each previous step has been complete.
Martin
thanks, jo
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