This seems like a pretty simple solution, so I like that :) On Mon, Jun 27, 2016 at 10:46 AM, Hervé Pagès <hpa...@fredhutch.org> wrote:
> Hi Mike, > > IIUC you want to do something like > > setdiff(methods(class="DESeqDataSet"), > methods(class="RangedSummarizedExperiment")) > > Maybe this could be handled by methods() itself e.g. with > an extra argument that lets the user choose if s/he wants to see > all the methods (i.e. specific + inherited) or only the specific > ones? > > H. > > On 06/27/2016 09:39 AM, Michael Love wrote: > >> hi, >> >> Following on a conversation from Bioc2016, I think it would be good to >> have >> a function available to Bioconductor users that helps in the following >> situation: >> >> I'm a user, trying out a new package 'foo', which defines the FooData >> class, that builds on top of SummarizedExperiment. The package author has >> defined a set of methods for the FooData class in the 'foo' package. From >> the R console, I want to see a list of these methods, but I don't want to >> look through the entire list of methods defined for SummarizedExperiment, >> Vector, and Annotated. >> >> I think such a function should live somewhere easily accessible for >> Bioconductor users. I worked out two implementations of this function >> which >> you can see here: >> >> http://rpubs.com/mikelove/pkgmethods >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
