Hi, I need some help with a new package I'm coding (which we plan to submit to BioC). I keep getting a warning in R CMD check that I haven't been able to figure out what is wrong. I'm guessing that it's something fairly straightforward, I'm just not seeing it right now.
The warning is: checking for missing documentation entries ... WARNING ## some output from loading SummarizedExperiment All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R See https://travis-ci.org/leekgroup/recount/builds/127982505#L746-L778 for details. The package code that matches this build report is https://github.com/leekgroup/recount/tree/35c0f786411e8e63b9ed76866d71273fef9654ea. I've read a few times https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Documenting-data-sets and double checked the documents. They seem fine to me. My guesses are: * Maybe I need to add to imports the SummarizedExperiment package, although the links like \link[SummarizedExperiment]{RangedSummarizedExperiment-class} do work. * Maybe I need to add \source{...} although I don't see this warning with https://github.com/lcolladotor/derfinder/blob/master/R/genomicState-data.R which doesn't use \source{...} If you have any tips on how I could narrow down the warning, that'd be great. I guess that I can try removing 1 by 1 the 5 data objects from this new package, building and checking to find which of them is the culprit. Thanks! Leo _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
