Thanks Leonardo and Steffen, I have just realized that Martin also mentioned travis in his reply but I didn't know what he was talking about. I will try it.
Thank you again, Carlos Ruiz ----- Mensaje original ----- De: "Leonardo Collado Torres" <lcoll...@jhu.edu> Para: "Steffen Neumann" <sneum...@ipb-halle.de> CC: "Martin Morgan" <martin.mor...@roswellpark.org>, "Ruiz Arenas, Carlos" <cr...@creal.cat>, bioc-devel@r-project.org Enviados: Viernes, 22 de Abril 2016 15:16:27 Asunto: Re: [Bioc-devel] Custom build of packages You could also run tests on Travis CI. That's what I do for my packages. See https://travis-ci.org/lcolladotor/derfinder and https://github.com/lcolladotor/derfinder/blob/master/.travis.yml for an example. If you want to use Travis, check the main docs https://docs.travis-ci.com/user/languages/r On Fri, Apr 22, 2016 at 7:59 AM, Steffen Neumann <sneum...@ipb-halle.de> wrote: > Hi, > > On Fr, 2016-04-22 at 10:53 +0000, Morgan, Martin wrote: >> All packages are built nightly, in both release and devel, and across >> three architectures. The build system is more complicated than >> building individual packages -- reverse dependencies need to be >> built, too, and successful builds synchronized with public >> repositories -- so the nightly builds will not change in the near >> future. >> >> The problem is likely that your local configuration is using the >> current version of R and Bioconductor, whereas as a developer you >> should be using the version of R and Bioconductor used in the 'devel' >> branch. The version of R in use on the build machines is given at the >> top of the build page > > I too have wanted the different build environments > as close to the "official" BioC machines as possible > for debugging. Especially preconfigured VMs or docker images > would be great. > > For the latter, you can use > > docker run -ti bioconductor/devel_base bash > > but I think even that is a slightly different setup > compared to the official build animals. > > I wouldn't even mind if I have to pay amazon (or google or whoever) > a few $$$ to fire-up a clone of the build machines, > log in remotely, and have a clone of the official environment. > Bonus points if that covered windows, mac and Linux alike. > > Just my 2c, > Yours, > Steffen > > > > > -- > IPB Halle AG Massenspektrometrie & Bioinformatik > Dr. Steffen Neumann http://www.IPB-Halle.DE > Weinberg 3 http://msbi.bic-gh.de > 06120 Halle Tel. +49 (0) 345 5582 - 1470 > +49 (0) 345 5582 - 0 > sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409 > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
