For this particular use case I think we might just make Biobase depend on matrixStats and then go forward.
On Wed, Mar 30, 2016 at 8:22 PM, Michael Lawrence <lawrence.mich...@gene.com > wrote: > Thanks. If we can identify specific conflicts between popular > packages, we might be able to work around them. I think S4Vectors is > coming to depend on matrixStats, so those conflicts will start > happening a lot more often now. > > Michael > > On Wed, Mar 30, 2016 at 4:56 PM, Kasper Daniel Hansen > <kasperdanielhan...@gmail.com> wrote: > > My usecase is when I import() two packages who has a conflict in a name. > > For example, both Biobase and matrixStats has both anyMissing and > > rowMedians. I am happy to get all of these two packages, but I need to > > resolve the conflict. Since I want to keep the ones from matrixStats I > know > > need to figure out how to import Biobase selectively. Which I can, using > > the tools from codetoolsBioC, but I would also be happy with an > > importFromExcept(), which would make my life much easier. > > > > Best, > > Kasper > > > > On Wed, Mar 30, 2016 at 4:47 PM, Michael Lawrence > > <lawrence.mich...@gene.com> wrote: > >> > >> I'm curious about which symbols you wouldn't want to import, and why. > >> > >> On Wed, Mar 30, 2016 at 12:19 PM, Zhu, Lihua (Julie) > >> <julie....@umassmed.edu> wrote: > >> > Hi, > >> > > >> > Is there a function to import all the exported objects from a package > >> > except a few named ones in NAMESPACE file? > >> > > >> > For example, I would like to import all the functions in S4Vectors > >> > except fold. Is there a way to specify this without listing all other > >> > functions using importFrom? > >> > > >> > Many thanks for your help! > >> > > >> > Best regards, > >> > > >> > Julie > >> > > >> > ******************************************** > >> > Lihua Julie Zhu, Ph.D > >> > Research Professor > >> > Department of Molecular, Cell and Cancer Biology (MCCB) > >> > Head of MCCB Bioinformatics Core > >> > Program in Molecular Medicine > >> > Program in Bioinformatics and Integrative Biology > >> > University of Massachusetts Medical School > >> > 364 Plantation Street, Room 613 > >> > Worcester, MA 01605 > >> > 508-856-5256 phone > >> > (508) 856 5460 fax > >> > > >> > > http://profiles.umassmed.edu/profiles/ProfileDetails.aspx?From=SE&Person=1134 > >> > > >> > > >> > [[alternative HTML version deleted]] > >> > > >> > _______________________________________________ > >> > Bioc-devel@r-project.org mailing list > >> > https://stat.ethz.ch/mailman/listinfo/bioc-devel > >> > >> _______________________________________________ > >> Bioc-devel@r-project.org mailing list > >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
