Hi, This is definitely 4 weeks early and things are working as intended. Due to https://github.com/travis-ci/travis-ci/issues/5809 I noticed that BiocInstaller does not yet support R 3.4.0. The main issue was my assumption that R-travis using `r: devel` would install R 3.3.0 as I describe in the issue I linked above.
I was failing to see this because builds for `regionReport` were completing successfully. However, builds for `derfinderPlot` failed and that's because `derfinderPlot` has Bioc-devel dependencies (S4Vectors >= 0.9.38). Thanks to Jim Hester I realized that both packages were being tested on R 3.4.0, and that BiocInstaller after failing would then default on Bioc-release. See https://travis-ci.org/leekgroup/derfinderPlot/builds/117500745#L419-L420 and https://travis-ci.org/leekgroup/regionReport/builds/117499393#L418-L419 Bioconductor version 3.2 (BiocInstaller 1.20.1), ?biocLite for help Bioconductor does not yet support R version 3.4.0 As for BiocInstaller, I'm a bit curious why it falls back to Bioc-release instead of Bioc-devel when trying to use it in a future R version that is not yet supported. In any case, I can fix my R-travis builds by specifying that I want them to be run on R 3.3.0 for now. I'm guessing that other developers who use R-travis might run into this issue in these 4 weeks before R 3.3.0 is released. Best, Leo Leonardo Collado Torres, PhD Candidate Department of Biostatistics Johns Hopkins University Bloomberg School of Public Health Website: http://lcolladotor.github.io/about.html _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
