I don't know much about deprecated packages and how to deal with them, but for your svn questions, start by reading the howto:
https://www.bioconductor.org/developers/source-control/ Kasper On Wed, Mar 16, 2016 at 6:19 AM, Glyn Bradley <glyn.x.brad...@gsk.com> wrote: > Hi All, > > Our package, CausalR, broke when igraph was updated last year. We have now > fixed this, but are having problems uploading the > new version. The package had become depreciated in devel, but there's > still a landing page in release. > > We checked out the existing Bioconductor version (via SVN) to a local > directory from > https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CausalR > The new, fixed, version was uploaded via SVN commit [Revision: 114806*] > back to > https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CausalR > > But if you open > https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CausalR in a > web browser > it's still showing old data from Revision: 114827 (we don't understand why > our new upload had a revision number lower > than this) > > Also, because CausalR had become depreciated in devel, we were previously > told we would have to update the package > in both the devel and release trunks, but we only have the one url > (https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CausalR) > So separately to the issues above about our update not seeming to stay on > the system, could someone please advise how we > update both trunks? > > Many thanks. Feel free to email me directly if this isn't a suitable > discussion for the mailing list. > Glyn > > > > > ________________________________ > > This e-mail was sent by GlaxoSmithKline Services Unlimited > (registered in England and Wales No. 1047315), which is a > member of the GlaxoSmithKline group of companies. The > registered address of GlaxoSmithKline Services Unlimited > is 980 Great West Road, Brentford, Middlesex TW8 9GS. > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
