Hi Dario, side note: if you want to find a bug and load the updated package over and over again it is much easier to use use devtools::load_all()!
It directly loads the updated version using the source package directory without the need to detach / recompile / reinstall. So you can e.g. do: 1.) change the R code 2.) load updated package via load_all() from the source (specify pkg dir if it is not the wd) 3.) check if bug is gone 4.) repeat Hope that helps, Bernd -----Original Message----- From: Bioc-devel [mailto:bioc-devel-boun...@r-project.org] On Behalf Of Michael Lawrence Sent: Friday, October 23, 2015 4:07 AM To: Dario Strbenac <dstr7...@uni.sydney.edu.au> Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] S4 Method of ExpressionSet Signature Not Found They're enclosed in different environments, for one. Basically, all bets are off if you're doing the unload, reinstall library cycle. On Thu, Oct 22, 2015 at 7:00 PM, Dario Strbenac <dstr7...@uni.sydney.edu.au> wrote: > Good day, > > The variables have the same contents. > > Browse[1]> selectParams@featureSelection nonstandardGenericFunction > for "DMDselection" defined from package "ClassifyR" > > function (expression, ...) > { > standardGeneric("DMDselection") > } > <environment: 0x4452b00> > Methods may be defined for arguments: expression Use > showMethods("DMDselection") for currently available ones. > Browse[1]> getGeneric("DMDselection") > nonstandardGenericFunction for "DMDselection" defined from package > "ClassifyR" > > function (expression, ...) > { > standardGeneric("DMDselection") > } > <environment: 0xb4996c8> > Methods may be defined for arguments: expression Use > showMethods("DMDselection") for currently available ones. > Browse[1]> c > Error in (function (classes, fdef, mtable) : > unable to find an inherited method for function 'DMDselection' for > signature '"ExpressionSet"' > > It only happens after I use : > > detach("package:ClassifyR", unload = TRUE) > install.packages("ClassifyR/", repos = NULL) > library(ClassifyR) > > because I'm modifying the package code and installing it repeatedly, > to find a bug. > > -------------------------------------- > Dario Strbenac > PhD Student > University of Sydney > Camperdown NSW 2050 > Australia > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
