Now that GAlignmentPairs supports discordant strand between mates, how hard
would it be to relax that restriction on readGAlignmentPairs()?
Also, would be nice if getDumpedAlignments() returned those dumped by
readGAlignmentPairs(). Right now, I'm reading a GAlignments (with the extra
mcols) and calling makeGAlignmentPairs(). Not so convenient.
Michael
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