Dear BioC team,
I noticed some problem with keggLink() function of KEGGREST package, and it can
be traced back to KEGG REST API Linked entries. Some of this API function is
broken. For example, the following line used to get all gene-pathway mapping
for human, but retrieves nothing now.
path.hsa= KEGGREST::keggLink("pathway", "hsa")
In fact, these two bulk queries with the rest api don’t work anymore.
http://rest.kegg.jp/link/pathway/hsa
http://rest.kegg.jp/link/hsa/pathway
but smaller queries on Linked entries seem to be fine. not sure whether other
REST API functions are affected or not. As a consequence, KEGGREST and many
dependent packages had build error.
http://bioconductor.org/checkResults/release/bioc-LATEST/KEGGREST/morelia-buildsrc.html
anway, just want you know about this, see if you can do anything on this.
Weijun
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