Thanks for reporting this. Looks like the elasticsearch daemon stopped for some reason. It's back up now. Dan
----- Original Message ----- > From: "Aedin Culhane" <ae...@jimmy.harvard.edu> > To: bioc-devel@r-project.org > Sent: Friday, August 28, 2015 2:07:18 PM > Subject: Support site > > Hi > I tried to query the support site and got "connection aborted". > Therefore I tried a "popular" query and entered Limma and still get > connection aborted. Any suggestions. I enclose a screen short of the > Error and the traceback below. > Aedin > > > > Environment: > > > Request Method: GET > Request URL: > https://support.bioconductor.org/local/search/page/?q=RNA > > Django Version: 1.6.5 > Python Version: 2.7.6 > Installed Applications: > ['django.contrib.auth', > 'django.contrib.contenttypes', > 'django.contrib.messages', > 'django.contrib.staticfiles', > 'django.contrib.sitemaps', > 'compressor', > 'django.contrib.sites', > 'django.contrib.admin', > 'django.contrib.humanize', > 'django.contrib.flatpages', > 'django.contrib.sessions', > 'biostar.apps.users', > 'biostar.apps.util', > 'biostar.apps.posts', > 'biostar.apps.messages', > 'biostar.apps.badges', > 'biostar.apps.planet', > 'biostar.server', > 'allauth', > 'allauth.account', > 'allauth.socialaccount', > 'allauth.socialaccount.providers.persona', > 'allauth.socialaccount.providers.google', > 'allauth.socialaccount.providers.facebook', > 'allauth.socialaccount.providers.github', > 'allauth.socialaccount.providers.stackexchange', > 'allauth.socialaccount.providers.twitter', > 'haystack', > 'crispy_forms', > 'djcelery', > 'kombu.transport.django', > 'south'] > Installed Middleware: > ('django.middleware.common.CommonMiddleware', > 'django.contrib.sessions.middleware.SessionMiddleware', > 'django.middleware.csrf.CsrfViewMiddleware', > 'django.contrib.auth.middleware.AuthenticationMiddleware', > 'django.contrib.messages.middleware.MessageMiddleware', > 'django.middleware.clickjacking.XFrameOptionsMiddleware', > 'django.contrib.flatpages.middleware.FlatpageFallbackMiddleware', > 'biostar.server.middleware.Visit') > > > Traceback: > File > "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/django/core/handlers/base.py" > in get_response > 112. response = wrapped_callback(request, > *callback_args, **callback_kwargs) > File > "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/django/views/generic/base.py" > in view > 69. return self.dispatch(request, *args, **kwargs) > File > "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/django/views/generic/base.py" > in dispatch > 87. return handler(request, *args, **kwargs) > File > "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/django/views/generic/list.py" > in get > 137. self.object_list = self.get_queryset() > File "/home/www-data/biostar-central/biostar/server/search.py" in > get_queryset > 62. query = > SearchQuerySet().filter(content=content).highlight()[:50] > File > "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/query.py" > in __getitem__ > 268. self._fill_cache(start, bound) > File > "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/query.py" > in _fill_cache > 166. results = self.query.get_results(**kwargs) > File > "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/backends/__init__.py" > in get_results > 644. self.run(**kwargs) > File > "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/backends/elasticsearch_backend.py" > in run > 949. results = self.backend.search(final_query, > **search_kwargs) > File > "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/backends/__init__.py" > in wrapper > 34. return func(obj, query_string, *args, **kwargs) > File > "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/backends/elasticsearch_backend.py" > in search > 516. doc_type='modelresult') > File > "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/pyelasticsearch/client.py" > in decorate > 93. return func(*args, query_params=query_params, > **kwargs) > File > "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/pyelasticsearch/client.py" > in search > 859. return self._search_or_count('_search', query, > **kwargs) > File > "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/pyelasticsearch/client.py" > in _search_or_count > 836. query_params=query_params) > File > "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/pyelasticsearch/client.py" > in send_request > 281. raise exc.info > > Exception Type: ProtocolError at /local/search/page/ > Exception Value: ('Connection aborted.', error(111, 'Connection > refused')) > > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
