----- Original Message ----- > From: "Vladislav Petyuk" <pet...@gmail.com> > To: Bioc-devel@r-project.org > Sent: Thursday, June 25, 2015 12:16:50 PM > Subject: [Bioc-devel] Challenges with package installation on fresh R > > Hi all, > I ran into a problem with dependencies during package installation. > Here is an example that intends to reproduce the problem > > https://github.com/vladpetyuk/toypack > > Majority of the packages (in Imports/Depends/Suggests and their > Imports/Depends/Suggests) install just fine. > However there is a handful of packages ("DO.db", "GO.db", > "org.Ce.eg.db", > "org.Hs.eg.db" and "reactome.db") that are being skipped for not an > obvious > to me reason. > In this toy example there is no use of those skipped packages. So it > won't > results in any kind of error. But in the real package their lack > results > in errors. >
You need to provide the complete output of R when you try and install the package. The error is in that output somewhere. Dan > Thank you, > Vlad > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
