On 06/05/2015 01:48 PM, Gabe Becker wrote:
I dunno, standardizeSeqInfo just seems really long for a function name
users are going to have to call.

At the risk of annoying Herve further, what about

    gr <- castSeqInfo(gr, "gh19")

grrrrr!


?

~G

On Fri, Jun 5, 2015 at 1:46 PM, Tim Triche, Jr. <tim.tri...@gmail.com
<mailto:tim.tri...@gmail.com>> wrote:

    maybe standardizeSeqinfo or fixSeqinfo is clearer after all

    Statistics is the grammar of science.
    Karl Pearson <http://en.wikipedia.org/wiki/The_Grammar_of_Science>

    On Fri, Jun 5, 2015 at 1:41 PM, Gabe Becker <becker.g...@gene.com
    <mailto:becker.g...@gene.com>> wrote:



        On Fri, Jun 5, 2015 at 1:39 PM, Tim Triche, Jr.
        <tim.tri...@gmail.com <mailto:tim.tri...@gmail.com>> wrote:

            how about just

            gr <- addSeqinfo(gr, "hg19")


        Add sounds like it's, well, adding rather than replacing (Which
        it sometimes would do.

        gr <- fixSeqInfo(gr, "hg19")

        instead?

        ~G


        --
        Gabriel Becker, Ph.D
        Computational Biologist
        Genentech Research





--
Gabriel Becker, Ph.D
Computational Biologist
Genentech Research

--
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpa...@fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319

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