On 04/29/2015 08:10 PM, Chenglin Liu wrote:
Dear all,
I am trying to develop a new package. Everything goes fine on Linux and Mac.
However, when I do
R CMD Check on Windows, there are a lot of warnings about
"namespace 'GenomeInfoDb' is not available and has been replaced by
.GlobalEnv when processing object ''.
Could anyone can help me about that?
Thank you in advance.
Installing package prior to check...
install for i386
* installing *source* package 'OperaMate' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
I think this means that you have a serialized item (e.g., an R object in the
data/ folder) that includes a reference to the GenomeInfoDb name space (e.g., a
Seqinfo() instance, perhaps associated with a GRanges?) but the version of R you
are using does not have the GenomeInfoDb package installed. Perhaps this
situation arises because your DESCRIPTION file is missing Imports: GenomeInfoDb
(or perhaps Depends: GenomeInfoDb) ?
If this does not help, then perhaps you can provide the content of your
DESCRIPTION file?
Martin Morgan
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
install for x64
* installing *source* package 'OperaMate' ...
** testing if installed package can be loaded
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
Warning: namespace 'GenomeInfoDb' is not available and has been replaced
by .GlobalEnv when processing object ''
* MD5 sums
packaged installation of 'OperaMate' as OperaMate_0.99.5.zip
* DONE (OperaMate)
Ashley
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