Hi Pete,
Excellent idea. That will make things like table() work out-of-the-box
on GenomicRanges objects. I'll add that.
Thanks,
H.
On 04/24/2015 09:43 AM, Peter Haverty wrote:
Would people be interested in having this:
setMethod("as.character", "GenomicRanges",
function(x) {
paste0(seqnames(x), ":", start(x), "-", end(x))
})
?
I find myself doing that a lot to make unique names or for output that
goes to collaborators. I suppose we might want to tack on the strand if it
isn't "*". I have some code for going the other direction too, if there is
interest.
Pete
____________________
Peter M. Haverty, Ph.D.
Genentech, Inc.
phave...@gene.com
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Program in Computational Biology
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