Hello everyone,
after updating to fresh R 3.2.0 from R 3.1.3, GO.db, org.Dm.eg.db and
org.Hs.eg.db are failed to load (sorry for non-english environment):
>library("GO.db")Error : .onLoad не удалось в loadNamespace() для 'GO.db',
>подробности:
вызов: ls(envir, all.names = TRUE)
ошибка: 2 аргумента переданы в .Internal(ls), а требуется 3Ошибка:
не удалась загрузка пакета или пространства имен для ‘GO.db’
> traceback()2: stop(gettextf("package or namespace load failed for %s",
> sQuote(package)),
call. = FALSE, domain = NA)
1: library("GO.db")
>sessionInfo()R version 3.2.0 (2015-04-16)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.10
locale:
[1] LC_CTYPE=ru_RU.UTF-8 LC_NUMERIC=C
LC_TIME=ru_RU.UTF-8
[4] LC_COLLATE=ru_RU.UTF-8 LC_MONETARY=ru_RU.UTF-8
LC_MESSAGES=ru_RU.UTF-8
[7] LC_PAPER=ru_RU.UTF-8 LC_NAME=C
LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=ru_RU.UTF-8
LC_IDENTIFICATION=C
attached base packages:
[1] stats4 parallel stats graphics grDevices utils
datasets methods
[9] base
other attached packages:
[1] BiocInstaller_1.16.2 RSQLite_1.0.0 DBI_0.3.1
AnnotationDbi_1.28.2
[5] GenomeInfoDb_1.2.5 IRanges_2.0.1 S4Vectors_0.4.0
GEOquery_2.32.0
[9] Biobase_2.26.0 BiocGenerics_0.12.1
loaded via a namespace (and not attached):
[1] Rcpp_0.11.5 MASS_7.3-40 munsell_0.4.2
colorspace_1.2-6 stringr_0.6.2
[6] plyr_1.8.1 tools_3.2.0 grid_3.2.0 gtable_0.1.2
digest_0.6.8
[11] reshape2_1.4.1 ggplot2_1.0.1 bitops_1.0-6 RCurl_1.95-4.5
scales_0.2.4
[16] XML_3.98-1.1 proto_0.3-10
Are there any way to fix this?
--
*Sincerely,*
*Sergei Ryazansky, PhD*
*IMG RAS, Moscow*
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