----- Original Message ----- > From: "Ulrich Bodenhofer" <bodenho...@bioinf.jku.at> > To: "Dan Tenenbaum" <dtene...@fredhutch.org> > Cc: "Hervé Pagès" <hpa...@fhcrc.org>, m...@bioinf.jku.at, "Johannes Palme" > <jpa...@aon.at>, bioc-devel@r-project.org > Sent: Monday, April 13, 2015 11:22:11 AM > Subject: Re: [Bioc-devel] OpenMP on Mac OS "Mavericks" build server morelia > > Hi Dan, > > Thanks for your reply! > > On our Mavericks machine (10.9.5 with XCode 6.1), there was no OpenMP > installed at all. The configure script correctly found that out and > compiled our package without OpenMP support. On morelia, however, the > configure script seems to enforce OpenMP or at least thinks there is > some OpenMP installed. And then, during compilation, the include file > omp.h is not found. Maybe omp.h has to be prefixed with some > directory, > I don't know. Do you know of any other Bioconductor package that > supports OpenMP on the Mavericks platform - to check out how this > package does it?
Openmp is not installed on the mavericks machines. That's why I asked how you had installed it. > > For the time being, the workaround of switching off OpenMP entirely > on > Mac platforms seems to solve the problem: our version 0.99.5 at last > builds smoothly on all four platforms. > > One more question: is it generally a good idea to build binary > packages > using OpenMP? What if somebody tries to install and run a package > built > with OpenMP on a Mac or Windows machine that has no OpenMP? I would > rather expect the Mac and Windows binary packages to be built for > maximum compatibility with standard systems. If a more experienced > user > wants to optimize the package for his/her platform, he/she can > compile > the source package him-/herself. I agree. This is why openmp is not installed on our mavericks build machines. I'm not sure why you're seeing the behavior you report on morelia. I will look into it. Dan > > Thanks and best regards, > Ulrich > > > Am 13.04.15 um 19:22 schrieb Dan Tenenbaum: > > Hi Ulrich, > > > > [... > > How did you set up OpenMP on your Mavericks machine? > > Dan > > > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
