hi,

i have just noticed that VariantFiltering breaks in the last build:

http://www.bioconductor.org/checkResults/3.1/bioc-LATEST/VariantFiltering/zin2-buildsrc.html

and the reason is that the devel annotation package

http://www.bioconductor.org/packages/devel/data/annotation/html/MafDb.ExAC.r0.3.sites.html

seems not to be available on the build system during the vignette execution.

it's strange b/c its landing page shows that the package is there and other MafDb annotation packages are loaded by VariantFiltering during the vignette execution without problems.

just to ensure that this is solved for the release/NEWS deadline let me know if you think this is something that can be fixed on the build machine or you prefer that i update VariantFiltering so that it does not attempt to load this package during the vignette execution, and we sort out the problem after the release.

thanks!!

robert.

_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel

Reply via email to