Dear Bioconductor, I am working with the annotation package "org.Pf.plasmo.db".
I tried to get the keys from the "ORF" column. > library(org.Pf.plasmo.db) > columns(org.Pf.plasmo.db) [1] "ORF" "ENZYME" "PATH" "SYMBOL" "GENENAME" [6] "GO" "EVIDENCE" "ONTOLOGY" "GOALL" "EVIDENCEALL" [11] "ONTOLOGYALL" "ALIAS2ORF" > keys(org.Pf.plasmo.db, "ORF") Error in sqliteSendQuery(con, statement, bind.data) : error in statement: no such table: sgd I tried both stable and devel version but neither the stable nor the devel seemed to work. To my knowledge sgd is related to S. cerevisiae. Is the "ORF" keytype availble for Malaria? Thanks a lot. > sessionInfo() R Under development (unstable) (2015-03-16 r67994) Platform: x86_64-unknown-linux-gnu (64-bit) Running under: Ubuntu 14.10 locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] parallel stats4 stats graphics grDevices utils datasets [8] methods base other attached packages: [1] org.Pf.plasmo.db_3.1.0 RSQLite_1.0.0 DBI_0.3.1 [4] AnnotationDbi_1.29.17 GenomeInfoDb_1.3.13 IRanges_2.1.43 [7] S4Vectors_0.5.22 Biobase_2.27.2 BiocGenerics_0.13.6 -- ******************************* Paolo Martini c/o Lab Romualdi via U. Bassi 58/b 35121 Padova, Italy Tel: 049 8276319 Fax: 049 8276159 e-mail: paolo.mart...@unipd.it http://romualdi.bio.unipd.it/ ******************************* [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
