hi,
i'm using the CompressedVRangesList class in VariantFiltering to hold
variants and their annotations across multiple samples and found that
there was no show method for this class (unless i'm missing the right
import here) so i made one within VariantFiltering by copying&pasting
from other similar classes:
setMethod("show", signature(object="CompressedVRangesList"),
function(object) {
lo <- length(object)
cat(classNameForDisplay(object), " of length ", lo, "\n",
sep = "")
if (!is.null(names(object)))
cat(BiocGenerics:::labeledLine("names", names(object)))
})
i guess, however, that the right home for this would be
VariantAnnotation. let me know if you consider adding it there (or
somewhere else) and i'll remove it from VariantFiltering.
thanks,
robert.
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