----- Original Message ----- > From: "avinash sahu" <avinash.s...@gmail.com> > To: bioc-devel@r-project.org > Sent: Tuesday, January 20, 2015 8:49:06 AM > Subject: [Bioc-devel] release new package bioccheck failing > > Hi All, > > I am trying to release a package https://github.com/vinash85/GOAL in > bioconductor. But BiocCheck is failing, however it only failing in > linux > and not in MAC. And I cannot figure out reason. The package is uses > Rcpp. > Both build, CHECK is passing in linux and mac. > I am using latest R (3.1.2) > The failing message from linux by BiocCheck is: > > * This is BiocCheck, version 1.2.1. > * BiocCheck is a work in progress. Output and severity of issues may > change. > * Installing package... > * This is a software package, checking vignette directories... > * REQUIRED: vignette sources in vignettes/ directory. > * Checking version number... > * RECOMMENDED: y of x.y.z version should be even in release > * Checking biocViews... > * CONSIDER: Adding some of these automatically suggested > biocViews: > Epigenetics > * Checking build system compatibility... > * Checking unit tests... > * CONSIDER: Adding unit tests. We strongly recommend them. See > http://www.bioconductor.org/developers/how-to/unitTesting-guidelines/. > * Checking native routine registration... > * RECOMMENDED: Register native routines! see > > http://cran.r-project.org/doc/manuals/R-exts.html#Registering-native-routines > * Checking for deprecated package usage... > * Parsing R code in R directory, examples, vignettes... > * Checking for T... > * Checking for F... > * Checking for browser()... > * Checking for <<-... > * Checking for library/require of GOAL... > * Checking DESCRIPTION/NAMESPACE consistency... > * Checking function lengths........ > * The longest function is 87 lines long > * The longest 5 functions are: > * generate.epieQTL.logistic() (R/simulate.eQTL.R, line 4): 87 lines > * fit.logit() (R/fit.logit.R, line 1): 27 lines > * mvrnormArma() (R/RcppExports.R, line 4): 3 lines > * find_correlation() (R/RcppExports.R, line 8): 3 lines > * filterSNP() (R/RcppExports.R, line 12): 3 lines > * Checking man pages... > > > > > ** Checking exported objects have runnable examples...Error in if > (line == > "## No test: " || insideDontTest || line == "## End(No test)") { : > missing value where TRUE/FALSE neededCalls: <Anonymous> ... > checkExportsAreDocumented -> doesManPageHaveRunnableExample -> > removeDontTestExecution halted* > >
Looks like a bug. I will take a look and report back. Dan > thanks in advance > regards > avi > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
