----- Original Message ----- > From: "Martin Morgan" <mtmor...@fredhutch.org> > To: "Joachim Schumann" <joachim.schum...@ufz.de>, bioc-devel@r-project.org > Sent: Wednesday, November 26, 2014 9:00:07 AM > Subject: Re: [Bioc-devel] BioC 3.0 CHECK ERROR > > On 11/26/2014 01:39 AM, Joachim Schumann wrote: > > Hi everyone, > > this morning I got an email from bioconductor. > > The message: > > > > According to the "Build/check report" for BioC 3.0, > > the flowCHIC package has the following problem(s): > > ERROR for 'R CMD check' on zin1. > > > > The error I get is the following: > > > > Error in callGeneric() : > > 'callGeneric' with a primitive needs explicit arguments (no > > formal args defined) > > Calls: calculate_overlaps_xor ... calculate_overlaps_xor -> .local > > -> bXOR -> > > round -> round -> callGeneric > > > > Does anyone know what the problem is? It seems that the round > > function causes > > the error. > > This is some kind of interaction with Matrix > > > library(EBImage) > > img = readImage(system.file(package="EBImage", "images", > > "nuclei.tif")) > > xx = round(img) > > library(Matrix) > > yy = round(img) > Error in callGeneric() : > 'callGeneric' with a primitive needs explicit arguments (no formal > args defined) > > which defines a Math2 group generic. How long has this been > appearing? It > doesn't seem like the build system R, EBImage or Matrix has changed > since > release, and the package is available via biocLite implying that it > once built...
I think the build system R has changed since release, since it's running 3.1.2 which was released on 10/31/2014, but release was 10/14/2014. Indeed, if I look at the flowCHIC_1.0.0.tgz DESCRIPTION file, I see in the "Built" line that it was built with R 3.1.1. So this suggests a problem with R-3.1.2? Is this a bug we should report? Dan > > Martin > > > > > Best, > > Joachim > > > > > -- > Computational Biology / Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N. > PO Box 19024 Seattle, WA 98109 > > Location: Arnold Building M1 B861 > Phone: (206) 667-2793 > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
