Cool. We should consider moving some of the infrastructure pieces to the github bridge.
I added a droplevels method for List that should take care of things. On Mon, Oct 6, 2014 at 6:11 PM, Ryan C. Thompson <r...@thompsonclan.org> wrote: > Hi, > > Yes, if something is on Github (or just any git/hg repo that I can clone) > then I'm much more likely to try to fix simple bugs that I discover and > submit patches or pull requests rather than report them as bugs. It doesn't > hurt that Github provides tools to submit pull requests from the terminal. > I've never learned cvs or svn because I mostly haven't had the need in the > past (haven't been working on projects that use cvs/svn). > > So in my case, yes, if S4Vectors was on Github I probably would have > cloned it and tried to fix it before reporting the issue here, and I would > have either reported it with a patch or explained what I tried and where I > got stuck. > > -Ryan > > On Mon 06 Oct 2014 05:55:02 PM PDT, Michael Lawrence wrote: > >> Makes sense to me. Just wondering: if S4Vectors were say on github, >> would this be something that you would be comfortable resolving via a >> pull request? Would social coding increase external contributions to >> the infrastructure? >> >> On Mon, Oct 6, 2014 at 5:13 PM, Ryan C. Thompson <r...@thompsonclan.org >> <mailto:r...@thompsonclan.org>> wrote: >> >> Hi, >> >> I've just noticed that DataFrame doesn't have a "droplevels" >> method, but "data.frame" does. In fact, "droplevels.data.frame" >> seems to work just fine on DataFrame objects. Could this be added? >> >> -Ryan >> >> >> > sessionInfo() >> R version 3.1.0 (2014-04-10) >> Platform: x86_64-unknown-linux-gnu (64-bit) >> >> locale: >> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C >> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 >> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 >> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C >> [9] LC_ADDRESS=C LC_TELEPHONE=C >> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C >> >> attached base packages: >> [1] splines grDevices datasets parallel graphics stats utils >> [8] methods base >> >> other attached packages: >> [1] DESeq2_1.4.5 RcppArmadillo_0.4.450.1.0 >> [3] Rcpp_0.11.2 cqn_1.10.0 >> [5] quantreg_5.05 SparseM_1.05 >> [7] preprocessCore_1.26.1 nor1mix_1.2-0 >> [9] mclust_4.4 baySeq_1.18.0 >> [11] DESeq_1.16.0 lattice_0.20-29 >> [13] locfit_1.5-9.1 edgeR_3.6.8 >> [15] limma_3.20.9 arrayQualityMetrics_3.20.0 >> [17] partitions_1.9-15 biomaRt_2.20.0 >> [19] functional_0.6 sqldf_0.4-7.1 >> [21] RSQLite.extfuns_0.0.1 RSQLite_0.11.4 >> [23] DBI_0.3.1 gsubfn_0.6-6 >> [25] proto_0.3-10 GenomicFeatures_1.16.2 >> [27] AnnotationDbi_1.26.0 chipseq_1.14.0 >> [29] inline_0.3.13 affy_1.42.3 >> [31] Biobase_2.24.0 ShortRead_1.22.0 >> [33] GenomicAlignments_1.0.6 BSgenome_1.32.0 >> [35] BiocParallel_0.6.1 Rsamtools_1.16.1 >> [37] Biostrings_2.32.1 XVector_0.4.0 >> [39] doParallel_1.0.8 iterators_1.0.7 >> [41] rtracklayer_1.24.2 GenomicRanges_1.16.4 >> [43] GenomeInfoDb_1.0.2 Matrix_1.1-4 >> [45] RColorBrewer_1.0-5 foreach_1.4.2 >> [47] plyr_1.8.1 stringr_0.6.2 >> [49] ggplot2_1.0.0 IRanges_1.22.10 >> [51] BiocGenerics_0.10.0 BiocInstaller_1.14.2 >> >> loaded via a namespace (and not attached): >> [1] acepack_1.3-3.3 affyio_1.32.0 affyPLM_1.40.1 >> [4] annotate_1.42.1 base64_1.2 base64enc_0.1-2 >> [7] BatchJobs_1.4 BBmisc_1.7 beadarray_2.14.1 >> [10] BeadDataPackR_1.16.0 bitops_1.0-6 brew_1.0-6 >> [13] Cairo_1.5-6 checkmate_1.4 chron_2.3-45 >> [16] cluster_1.15.3 codetools_0.2-9 colorspace_1.2-4 >> [19] compiler_3.1.0 digest_0.6.4 fail_1.2 >> [22] foreign_0.8-61 Formula_1.1-2 gcrma_2.36.0 >> [25] genefilter_1.46.1 geneplotter_1.42.0 gmp_0.5-12 >> [28] grid_3.1.0 gridSVG_1.4-0 gtable_0.1.2 >> [31] Hmisc_3.14-5 hwriter_1.3.2 illuminaio_0.6.1 >> [34] latticeExtra_0.6-26 MASS_7.3-34 munsell_0.4.2 >> [37] nnet_7.3-8 polynom_1.3-8 RCurl_1.96-0 >> [40] reshape2_1.4 RJSONIO_1.2-0.2 rpart_4.1-8 >> [43] scales_0.2.4 sendmailR_1.2-1 setRNG_2013.9-1 >> [46] stats4_3.1.0 survival_2.37-7 SVGAnnotation_0.93-1 >> [49] tools_3.1.0 vsn_3.32.0 XML_3.98-1.1 >> [52] xtable_1.7-4 zlibbioc_1.10.0 >> >> _________________________________________________ >> Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org> mailing >> list >> https://stat.ethz.ch/mailman/__listinfo/bioc-devel >> <https://stat.ethz.ch/mailman/listinfo/bioc-devel> >> >> >> [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
