Of note, this is not an error and seems at this time not even to be a warning. A message is emitted indicating the deprecation, so we have a release to figure out how to deal with the fact that the *CHR/*CHRLOC entities will go away in the next release.
There are various possible workarounds. Some more commentary will be forthcoming. On Tue, Sep 23, 2014 at 3:52 AM, calogero UNITO <raffaele.calog...@unito.it> wrote: > Hi, > I am the maintainer of chimera package and I am getting the following > error in the develop version: > > org.Hs.egCHRLOC is deprecated as the data is better accessed from > another location. Please use an appropriate TxDb object or package for > this kind of data. > > Could please indicate me which package I should used instead of > org.Hs.eg.db ? > > Cheers > Raf > > -- > ---------------------------------------- > Prof. Raffaele A. Calogero > Bioinformatics and Genomics Unit > MBC Centro di Biotecnologie Molecolari > Via Nizza 52, Torino 10126 > Tel. ++39 0116706457 > Fax ++39 0112366457 > Mobile ++39 3333827080 > email: raffaele.calog...@unito.it > raffaele.calog...@gmail.com > www: http://www.bioinformatica.unito.it > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
