Hi All,
I am developing a package for Bioconductor 3.0. I "import" on a number of
packages:
methods GenomicRanges rtracklayer BiocParallel GenomicFiles GenomicFeatures
I noticed that depending on the order by which these packages are
library'ed the code
summary(someBigWigFileViewObject, type="mean")
will silently fail (i.e. it returns) a summaryDefault object
Length Class Mode
1 BigWigFileViews S4
Trying to pin-down the reason it appears that if AnnotatioDbi is loaded
after Biostrings (not a direct dependency but loaded) the summary function
changes from "s4" "generic" to "s3" "generic" which breaks GenomicFiles and
probably others stuff.
Yours,
Marcin
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