Hi Vojtech,
On 7/25/2014 7:32 AM, Vojtech Kulvait wrote:
Hello,
when I try to install affycoretools in devel i get an error:
* installing *source* package ‘affycoretools’ ...
** R
** inst
** preparing package for lazy loading
Error : object ‘symbols2indices’ is not exported by 'namespace:limma'
ERROR: lazy loading failed for package ‘affycoretools’
Cutting out just what you think is important from the output from
biocLite isn't really helpful. Instead, please give us everything.
I cannot see how this has anything to do with affycoretools anyway. I
don't import symbols2indices, nor do I call that function in any code in
affycoretools. Plus, limma exports every function except those that
begin with a period, so symbols2indices is for sure exported. And to top
it all off, the build report for affycoretools is clean, except for some
warnings I will have to clean up sometime
(http://bioconductor.org/checkResults/devel/bioc-LATEST/affycoretools/zin1-checksrc.html)
If I were to make a haphazard guess, I would think your limma package
install is borked somehow and you might be better off re-installing it.
Best,
Jim
I think I have up to date instalation of all packages.
Vojtech.
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James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
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