I was surprised to see that sequence lengths weren't set in the transcriptDb object TxDb.Athaliana.BioMart.plantsmart19 (I checked TxDb.Athaliana.BioMart.plantsmart21 in devel too, and it had the same issue). This seems like something that would be set (though maybe TranscriptDb objects created from BioMart don't automatically receive this information?). Is this something that could be set in future versions?
Vince -- Vince Buffalo Ross-Ibarra Lab (www.rilab.org) Plant Sciences, UC Davis [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel