Is there a reason why the seqnames of SNPlocs.Hsapiens.dbSNP.20120608 (and 
possibly the other SNPlocs.*) use the prefix "ch" instead of "chr"? E.g. "ch1" 
instead of "chr1". It doesn't seem to fit with any standard way of naming 
chromosomes and means that these need to be renamed to use with most other 
Bioconductor data sources.
Thanks,
Pete
--------------------------------
Peter Hickey,
PhD Student/Research Assistant,
Bioinformatics Division,
Walter and Eliza Hall Institute of Medical Research,
1G Royal Parade, Parkville, Vic 3052, Australia.
Ph: +613 9345 2324

[email protected]
http://www.wehi.edu.au


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