----- Original Message ----- > From: "Dan Tenenbaum" <dtene...@fhcrc.org> > To: "Kasper Daniel Hansen" <kasperdanielhan...@gmail.com> > Cc: bioc-devel@r-project.org > Sent: Friday, June 13, 2014 4:24:27 PM > Subject: Re: [Bioc-devel] BiocCheck > > > > ----- Original Message ----- > > From: "Kasper Daniel Hansen" <kasperdanielhan...@gmail.com> > > To: bioc-devel@r-project.org > > Sent: Wednesday, May 28, 2014 7:20:00 AM > > Subject: [Bioc-devel] BiocCheck > > > > 1) The hash bang in the BiocCheck script currently requires > > intervention at > > install time. > > > > It would be much more convenient if the script could read of the > > location > > of R, in the same way as (say) the Sweave script can. In fact, I > > modified > > the BiocCheck script as per the Sweave script but ran into problems > > with > > .BiocCheckFromCommandLine, and figured I better stop. > > I've addressed this in BiocCheck 1.1.4. I just missed the build > system cutoff for tonight's builds so this will be available on > Sunday via biocLite().
BTW, you'll have to manually delete your BiocCheck script before reinstalling BiocCheck in order to get the new one (which does not hardcode any paths). Dan > > > > > 2) Re. the checks for coding style: it would be convenient if there > > was an > > option (perhaps disabled by default, perhaps not) which lists the > > offending > > files for each "issue". > > Still haven't gotten to this yet. > > Dan > > > > > > Best, > > Kasper > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
