Hi Ashley,
----- Original Message -----
> From: "Ashley Ng" <a...@wehi.edu.au>
> To: dtene...@fhcrc.org
> Cc: bioc-devel@r-project.org
> Sent: Tuesday, April 15, 2014 3:04:23 AM
> Subject: biocLite “no packages in repository” error
>
> Hi Dan
>
> I seem to getting a “no packages in repository” biocLite error after
> installing R 3.10 and trying to upgrade packages:
>
> > source("http://bioconductor.org/biocLite.R";)
> Bioconductor version 2.14 (BiocInstaller 1.13.3), ?biocLite for help
> > biocLite()
> Error: 'no packages in repository (no internet connection?)' while
> trying
> http://bioconductor.org/packages/2.14/bioc
>
> > sessionInfo()
> R version 3.1.0 (2014-04-10)
> Platform: x86_64-apple-darwin13.1.0 (64-bit)
>
> locale:
> [1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> other attached packages:
> [1] BiocInstaller_1.13.3
>
> loaded via a namespace (and not attached):
> [1] tools_3.1.0
> >
>
What is the result of the following command:
library(BiocInstaller)
biocinstallRepos()
?
Dan
> Cheers
>
> Ashley Ng
>
> Clinical Haematologist and Post Doctoral Fellow
> The Royal Melbourne Hospital
> The Walter and Eliza Hall Institute of Medical Research, Cancer and
> Haematology Division
> 1G Royal Parade
> Parkville, 3050
> Melbourne, Australia
>
>
>
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