Hi Ryan, I ran this code w/ the data you sent, and my system does not crash in either case ... perhaps you're barking up the wrong tree?
sessionInof is below, -steve sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] splines stats graphics grDevices utils datasets methods base other attached packages: [1] locfit_1.5-9.1 xlsxjars_0.5.0 rJava_0.9-5 edgeR_3.4.2 limma_3.18.5 devtools_1.4.1 loaded via a namespace (and not attached): [1] compiler_3.0.2 digest_0.6.4 evaluate_0.5.1 grid_3.0.2 httr_0.2 lattice_0.20-24 memoise_0.1 parallel_3.0.2 RCurl_1.95-4.1 stringr_0.6.2 tools_3.0.2 whisker_0.3-2 On Mon, Dec 16, 2013 at 10:45 AM, Ryan C. Thompson <r...@thompsonclan.org> wrote: > Hello, > > I have found an issue where having the xlsxjars package loaded kills the > entire R session with a segfault when "edgeR::estimateDisp" is called on my > dataset. The issue seems to be specific to my data, since a random integer > matrix of identical dimension does not trigger the bug. Other than being > derived from ChIP-Seq input samples, there is nothing special about my data > that I know of. > > I have prepared a test case with a subset of my data that reproducibly > triggers the crash. You can find the data and script to reproduce here: > > https://www.dropbox.com/sh/e4qbd8txll5vysj/NE8xsa6bxo > > Thanks, > > -Ryan > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel -- Steve Lianoglou Computational Biologist Genentech _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
