That's got to be it. Thanks!
--t
> On Nov 4, 2013, at 12:46 PM, Dan Tenenbaum <dtene...@fhcrc.org> wrote:
>
>
>
> ----- Original Message -----
>> From: "Tim Triche, Jr." <tim.tri...@gmail.com>
>> To: bioc-devel@r-project.org
>> Sent: Monday, November 4, 2013 12:25:19 PM
>> Subject: [Bioc-devel] disappearing .tex file when running R CMD Sweave on a
>> new vignette
>>
>> I get a bizarre error when compiling a newly-added Methylumi
>> vignette:
>>
>> 10 : echo keep.source term verbatim (label = sessioninfo,
>> methylumi450k.Rnw:136)
>> Error in driver$finish(drobj) :
>> the output file 'methylumi450k.tex' has disappeared
>> Calls: <Anonymous> -> do.call -> <Anonymous> -> <Anonymous>
>> Execution halted
>>
>> This is bizarre because 1) the file is still there, and 2) all the
>> heavy
>> lifting is done.
>>
>> sessionInfo(), etc. is included properly and the vignette concludes
>> with
>> \end{document}, but nothing I do seems to resolve this driver error.
>>
>> Any suggestions would be most appreciated.
>
> Probably has to do with calling setwd() in the vignette? Maybe you need an
> on.exit() that restores the original directory. My guess is that you changed
> directory and then R can't see the tex file because it's in a different
> directory. See
> http://stackoverflow.com/questions/12162092/r-sweave-output-error
>
> Dan
>
>
>> Thanks,
>>
>> --t
>>
>>
>> *He that would live in peace and at ease, *
>> *Must not speak all he knows, nor judge all he sees.*
>>
>> Benjamin Franklin, Poor Richard's
>> Almanack<http://archive.org/details/poorrichardsalma00franrich>
>>
>> [[alternative HTML version deleted]]
>>
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>>
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