Dear Bioc-devel,
First, I would like to inform you about a new package added to bioconductor
2.13.
It is called 'flipflop' and aims to discover which transcripts of a gene
are expressed in a given sample together with their abundances, based on
RNA-Seq read data.
It takes sam alignment file as input and output a GRange object for each
gene together with a global gtf file.
Any feedback is highly welcome !
Second, I have to say that I just made a commit in the released version,
bumped from 1.0.0 to 1.0.1 in order to fix an important bug.
I was storing GRanges object into a GRangesList(), but in that case the
number of metadata columns of each GRanges object has to be the same,
which is not my case. So I changed to a regular list() storing GRange
objects.
Cheers,
Elsa Bernard
BioInformatics Phd student
Institut Curie U900 - Mines ParisTech
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