Also, it goes without saying that I am happy to provide a patch for
GenomicRanges, and check that it passes R CMD check, to minimize the work
of the maintainer.
Kasper
On Sun, Oct 6, 2013 at 9:28 AM, Kasper Daniel Hansen <
kasperdanielhan...@gmail.com> wrote:
> bsseq::data.frame2GRanges does the obvious step of converting a data.frame
> to GRanges. It has a couple of bells and whistles where strand can be
> ignored and additional columns (apart from genomic location) may be ignore
> in the output object.
>
> I (and now quite a few other people) use this function almost every day.
> I have seen other implementations in other packages, suggesting this is
> not just something I (we) use.
>
> I suggests adding this function to GenomicRanges. I am happy to support
> it going forward.
>
> Using this function we could also add an as(x, "GRanges") method for
> x=data.frame, but I still suggest keeping the basic function for the
> extended functionality it provides.
>
> Best,
> Kasper
>
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